Examples

Commented examples, each a script in the examples folder of the repository (with its own environment: julia --project=examples). The figures can be rotated and zoomed.

Getting started

Myelinated axons

Geometry, model and signal of three myelinated axons

Geometry recipes

Plates, disks, cylinders, spheres and dense tissue

Tissue

White matter

Anisotropic diffusion in packed axons, with periodic boundaries

Tortuosity

The extracellular space of dense tissue, with and without walls

Neurons

Signal and ADC of a realistic spindle neuron

Methods

ADC methods

Fit, homogenized model, matrix formalism, short time approximation

Matrix formalism

Laplace eigenfunctions and a reduced model of the signal

Custom gradients

Any gradient sequence, and plots during the time stepping

Validation

Finite elements against analytical solutions